CultivariumFungal DNA methylation
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Emergomyces africanus

EA

GCA_001660665.1 · 29.7 Mb · 4,444 contigs · 8,858 genes

Coverage

Sites with fewer than 5× per-strand reads cannot be called as methylated regardless of signal — same threshold used for the high-confidence sites below. Both strands counted independently.

Cytosines2,691,648 of 12,908,342 sites
20.9% uncallable
Adenines4,597,041 of 16,799,182 sites
27.4% uncallable

Methylation summary

High-confidence sites (≥5× coverage, >90% reads modified). Percentages: 5mC/5hmC over 12,908,342 cytosines; 6mA over 16,799,182 adenines (both strands).

Download BED
5mC263 sites
0.0020% of cytosines
5hmC0 sites
0% of cytosines
6mA0 sites
0% of adenines
Densitycombined
8.9e-3sites / kb

Note: from Dorado's 5mC_5hmC basecaller model (distinguishes 5mC, 5hmC, and canonical C in one call) plus a separate 6mA model. 5mC is the primary cytosine methylation in most fungi. Fungi lack TET oxidases, so 5hmC should be essentially absent — any signal above background is an upper bound and may reflect model misclassification.

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