Fungal research @ Cultivarium

Culture Image Atlas

Browse time-lapse videos, growth images, and growth curves for fungal species on diverse carbon, nitrogen, and standard media panels.

Codon Explorer

Explore codon usage patterns across 2,100+ fungal species, optimize gene sequences for heterologous expression, and compare codon adaptation indices.

Electroporation

Browse electroporation conditions tested across fungal strains, including electrical parameters, media, culture preparation, and qualitative outcomes for each experiment.

Fungal Ku Gene Database

Annotation and literature curation of non-homologous end joining (NHEJ) genes and knockouts across Fungi. Browse characterized Ku70/Ku80 homologs identified via HMM-based search across fungal genomes.

Fungal DNA Methylation

Browse 5mC, 5hmC, and 6mA methylation calls across four fungal genomes. Interactive genome browser with per-contig tracks built from Nanopore sequencing, Dorado basecalling, and modkit thresholded BEDs.

PRISM AI-Powered Protocols

PRISM is an AI-assisted laboratory protocol platform through which we are sharing protocols for fungal biology. PRISM uses AI to help researchers create reproducible, detailed experimental procedures.

Some of our fungal protocols:

Cultivarium Portal

A general resource for information and user discussion on microbial species and strains, including 72,948 species of Fungi. Sign up for access.