Coprinopsis cinerea
CCGCF_000182895.1 · 36.2 Mb · 68 contigs · 13,645 genes
Coverage
Sites with fewer than 5× per-strand reads cannot be called as methylated regardless of signal — same threshold used for the high-confidence sites below. Both strands counted independently.
Cytosines2,464,049 of 18,689,911 sites
13.2% uncallable
Adenines2,946,386 of 17,502,645 sites
16.8% uncallable
Methylation summary
High-confidence sites (≥5× coverage, >90% reads modified). Percentages: 5mC/5hmC over 18,689,911 cytosines; 6mA over 17,502,645 adenines (both strands).
5mC128,902 sites
0.690% of cytosines
5hmC38 sites
0.00020% of cytosines
6mA4 sites
2.29e-5% of adenines
Densitycombined
3.56sites / kb
Note: from Dorado's 5mC_5hmC basecaller model (distinguishes 5mC, 5hmC, and canonical C in one call) plus a separate 6mA model. 5mC is the primary cytosine methylation in most fungi. Fungi lack TET oxidases, so 5hmC should be essentially absent — any signal above background is an upper bound and may reflect model misclassification.
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