CultivariumFungal DNA methylation
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Rhizopus arrhizus

RA

GCA_011764125.1 · 43.9 Mb · 34,282 contigs · 15,982 genes

Coverage

Sites with fewer than 5× per-strand reads cannot be called as methylated regardless of signal — same threshold used for the high-confidence sites below. Both strands counted independently.

Cytosines9,366,165 of 16,687,881 sites
56.1% uncallable
Adenines14,064,902 of 27,232,632 sites
51.6% uncallable

Methylation summary

High-confidence sites (≥5× coverage, >90% reads modified). Percentages: 5mC/5hmC over 16,687,881 cytosines; 6mA over 27,232,632 adenines (both strands).

Download BED
5mC61 sites
0.00037% of cytosines
5hmC0 sites
0% of cytosines
6mA60,046 sites
0.220% of adenines
Densitycombined
1.37sites / kb

Note: from Dorado's 5mC_5hmC basecaller model (distinguishes 5mC, 5hmC, and canonical C in one call) plus a separate 6mA model. 5mC is the primary cytosine methylation in most fungi. Fungi lack TET oxidases, so 5hmC should be essentially absent — any signal above background is an upper bound and may reflect model misclassification.

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